CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-029465
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 Protein TSSC1 
Protein Synonyms/Alias
  
Gene Name
 TSSC1 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
213LEGKGQLKFTSGRWSubiquitination[1, 2]
267DLDFNPNKQYYLASCubiquitination[1, 3]
279ASCGDDCKVKFWDTRubiquitination[1, 2, 3, 4]
281CGDDCKVKFWDTRNVubiquitination[1]
293RNVTEPVKTLEEHSHubiquitination[1]
409NRVPRALKYHILL**ubiquitination[1]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [2] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302]
 [3] Global identification of modular cullin-RING ligase substrates.
 Emanuele MJ, Elia AE, Xu Q, Thoma CR, Izhar L, Leng Y, Guo A, Chen YN, Rush J, Hsu PW, Yen HC, Elledge SJ.
 Cell. 2011 Oct 14;147(2):459-74. [PMID: 21963094]
 [4] Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.
 Udeshi ND, Mani DR, Eisenhaure T, Mertins P, Jaffe JD, Clauser KR, Hacohen N, Carr SA.
 Mol Cell Proteomics. 2012 May;11(5):148-59. [PMID: 22505724
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome; Repeat; WD repeat. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 414 AA 
Protein Sequence
MEDDAPVIYG LEFQARALTP QTAETDAIRF LVGTQSLKYD NQIHIIDFDD ENNIINKNVL 60
LHQAGEIWHI SASPADRGVL TTCYNRTFCC VLSLDSFGAL GKSAAQLFIA LATSSDSKVL 120
TCAAVWRMPK ELESGSHESP DDSSSTAQTL ELLCHLDNTA HGNMACVVWE PMGDGKKIIS 180
LADNHILLWD LQESSSQAVL ASSASLEGKG QLKFTSGRWS PHHNCTQVAT ANDTTLRGWD 240
TRSMSQIYCI ENAHGQLVRD LDFNPNKQYY LASCGDDCKV KFWDTRNVTE PVKTLEEHSH 300
WVWNVRYNHS HDQLVLTGSS DSRVILSNMV SISSEPFGHL VDDDDISDQE DHRSEEKSKE 360
PLQDNVIATY EEHEDSVYAV DWSSADPWLF ASLSYDGRLV INRVPRALKY HILL 414 
Gene Ontology
  
Interpro
 IPR015943; WD40/YVTN_repeat-like_dom.
 IPR001680; WD40_repeat.
 IPR019775; WD40_repeat_CS.
 IPR017986; WD40_repeat_dom. 
Pfam
 PF00400; WD40 
SMART
 SM00320; WD40 
PROSITE
 PS00678; WD_REPEATS_1
 PS50082; WD_REPEATS_2
 PS50294; WD_REPEATS_REGION 
PRINTS