CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-011598
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Lactadherin 
Protein Synonyms/Alias
 Breast epithelial antigen BA46; HMFG; MFGM; Milk fat globule-EGF factor 8; MFG-E8; SED1; Lactadherin short form; Medin 
Gene Name
 MFGE8 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
59SYTCTCLKGYAGNHCubiquitination[1]
69AGNHCETKCVEPLGMubiquitination[1]
156LASHEYLKAFKVAYSubiquitination[2, 3]
177DFIHDVNKKHKEFVGubiquitination[1]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [2] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [3] hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.
 Chen Z, Zhou Y, Song J, Zhang Z.
 Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. [PMID: 23603789
Functional Description
 Plays an important role in the maintenance of intestinal epithelial homeostasis and the promotion of mucosal healing. Promotes VEGF-dependent neovascularization (By similarity). Contributes to phagocytic removal of apoptotic cells in many tissues. Specific ligand for the alpha-v/beta-3 and alpha-v/beta-5 receptors. Also binds to phosphatidylserine-enriched cell surfaces in a receptor-independent manner. Zona pellucida-binding protein which may play a role in gamete interaction. Binds specifically to rotavirus and inhibits its replication. 
Sequence Annotation
 DOMAIN 24 67 EGF-like.
 DOMAIN 70 225 F5/8 type C 1.
 DOMAIN 230 387 F5/8 type C 2.
 MOTIF 46 48 Cell attachment site.
 CARBOHYD 228 228 N-linked (GlcNAc...); atypical.
 CARBOHYD 238 238 N-linked (GlcNAc...).
 CARBOHYD 325 325 N-linked (GlcNAc...).
 CARBOHYD 329 329 N-linked (GlcNAc...).
 CARBOHYD 350 350 N-linked (GlcNAc...).
 DISULFID 27 38 By similarity.
 DISULFID 32 55 By similarity.
 DISULFID 57 66 By similarity.
 DISULFID 70 225 By similarity.
 DISULFID 212 216 By similarity.
 DISULFID 230 387 By similarity.  
Keyword
 Alternative splicing; Amyloid; Angiogenesis; Cell adhesion; Complete proteome; Direct protein sequencing; Disulfide bond; EGF-like domain; Fertilization; Glycoprotein; Host-virus interaction; Membrane; Polymorphism; Reference proteome; Repeat; Secreted; Signal. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 387 AA 
Protein Sequence
MPRPRLLAAL CGALLCAPSL LVALDICSKN PCHNGGLCEE ISQEVRGDVF PSYTCTCLKG 60
YAGNHCETKC VEPLGMENGN IANSQIAASS VRVTFLGLQH WVPELARLNR AGMVNAWTPS 120
SNDDNPWIQV NLLRRMWVTG VVTQGASRLA SHEYLKAFKV AYSLNGHEFD FIHDVNKKHK 180
EFVGNWNKNA VHVNLFETPV EAQYVRLYPT SCHTACTLRF ELLGCELNGC ANPLGLKNNS 240
IPDKQITASS SYKTWGLHLF SWNPSYARLD KQGNFNAWVA GSYGNDQWLQ VDLGSSKEVT 300
GIITQGARNF GSVQFVASYK VAYSNDSANW TEYQDPRTGS SKIFPGNWDN HSHKKNLFET 360
PILARYVRIL PVAWHNRIAL RLELLGC 387 
Gene Ontology
 GO:0009897; C:external side of plasma membrane; IEA:Compara.
 GO:0005615; C:extracellular space; IEA:Compara.
 GO:0070062; C:extracellular vesicular exosome; IDA:UniProtKB.
 GO:0019897; C:extrinsic to plasma membrane; IEA:Compara.
 GO:0008429; F:phosphatidylethanolamine binding; IEA:Compara.
 GO:0001786; F:phosphatidylserine binding; IEA:Compara.
 GO:0001525; P:angiogenesis; IEA:UniProtKB-KW.
 GO:0007155; P:cell adhesion; IEA:UniProtKB-KW.
 GO:0006911; P:phagocytosis, engulfment; IEA:Compara.
 GO:0006910; P:phagocytosis, recognition; IEA:Compara.
 GO:2000427; P:positive regulation of apoptotic cell clearance; IEA:Compara.
 GO:0007338; P:single fertilization; IEA:UniProtKB-KW.
 GO:0019048; P:virus-host interaction; IEA:UniProtKB-KW. 
Interpro
 IPR000421; Coagulation_fac_5/8-C_type_dom.
 IPR000742; EG-like_dom.
 IPR013032; EGF-like_CS.
 IPR008979; Galactose-bd-like.
 IPR027060; Lactadherin. 
Pfam
 PF00008; EGF
 PF00754; F5_F8_type_C 
SMART
 SM00181; EGF
 SM00231; FA58C 
PROSITE
 PS00022; EGF_1
 PS01186; EGF_2
 PS50026; EGF_3
 PS01285; FA58C_1
 PS01286; FA58C_2
 PS50022; FA58C_3 
PRINTS