CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-032255
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 RNA-binding protein 39 
Protein Synonyms/Alias
  
Gene Name
 Rbm39 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
177EFFSTVGKVRDVRMIubiquitination[1]
231VQASQAEKNRAAAMAubiquitination[1]
Reference
 [1] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023] 
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 273 AA 
Protein Sequence
MADDIDIEAM LEAPYKKDEN KLNSANGHEE RSKKRKKSKS RSRSHERKRS KSKERKRSRD 60
RERKKSKSRE RKRSRSKERR RSRSRSRDRR FRGRYRSPYS GPKFNSAIRG KIGLPHSIKL 120
RRRSRSKSPF RKDKSPVREP IDNLTPEERD ARTVFCMQLA ARIRPRDLEE FFSTVGKVRD 180
VRMISDRNSR RSKGIAYVEF VDVSSVPLAI GLTGQRVLGV PIIVQASQAE KNRAAAMANN 240
LQKGSAGPMR LYVGSLHFNI TEDMLRGIFE PFG 273 
Gene Ontology
 GO:0005634; C:nucleus; TAS:MGI.
 GO:0000166; F:nucleotide binding; IEA:InterPro.
 GO:0003723; F:RNA binding; IEA:InterPro.
 GO:0003713; F:transcription coactivator activity; TAS:MGI.
 GO:0006397; P:mRNA processing; IEA:InterPro.
 GO:0006351; P:transcription, DNA-dependent; TAS:MGI. 
Interpro
 IPR006509; CC1_SF.
 IPR012677; Nucleotide-bd_a/b_plait.
 IPR000504; RRM_dom. 
Pfam
 PF00076; RRM_1 
SMART
 SM00360; RRM 
PROSITE
 PS50102; RRM 
PRINTS