CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-037194
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 Inactive ubiquitin carboxyl-terminal hydrolase 54 
Protein Synonyms/Alias
  
Gene Name
 USP54 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
418EPDIYQEKLSQVRDVubiquitination[1, 2, 3, 4]
428QVRDVRSKDLGSSTDubiquitination[1, 3]
656GETSQGAKYTGRTLNubiquitination[1, 2]
Reference
 [1] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [2] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [3] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661]
 [4] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 819 AA 
Protein Sequence
MDLDELQNQA KLRLALHGAS CSTHSRALVD KKLQISIRKA RSLQDRMQQQ QSPQQPSQPS 60
ACLPTQAGTL SQPTSEQPIP LQVLLSQEAQ LESGMDTEFG ASSFFHSPAS CHESHSSLSP 120
ESSAPQHSSP SRSALKLLTS VEVDNIEPSA FHRQGLPKAP GWTEKNSHHS WEPLDAPEGK 180
LQGSRCDNSS CSKLPPQEGR GIAQEQLFQE KKDPANPSPV MPGIATSERG DEHSLGCSPS 240
NSSAQPSLPL YRTCHPIMPV ASSFVLHCPD PVQKTNQCLQ GQSLKTSLTL KVDRGSEETY 300
RPEFPSTKGL VRSLAEQFQR MQGVSMRDST GFKDRSLSGS LRKNSSPSDS KPPFSQGQEK 360
GHWPWAKQQS SLEGGDRPLS WEESTEHSSL ALNSGLPNGE TSSGGQPRLA EPDIYQEKLS 420
QVRDVRSKDL GSSTDLGTSL PLDSWVNITR FCDSQLKHGA PRPGMKSSPH DSHTCVTYPE 480
RNHILLHPHW NQDTEQETSE LESLYQASLQ ASQAGCSGWG QQDTAWHPLS QTGSADGMGR 540
RLHSAHDPGL SKTSTAEMEH GLHEARTVRT SQDSSNVRKP LETGHRCSSS SSLPVIHDPS 600
VFLLGPQLYL PQPQFLSPDV LMPTMAGEPN RLPGTSRSVQ QFLAMCDRGE TSQGAKYTGR 660
TLNYQSLPHR SRTDNSWAPW SETNQHIGTR FLTTPGCNPQ LTYTATLPER SKGLQVPHTQ 720
SWSDLFHSPS HPPIVHPVYP PSSSLHVPLR SAWNSDPVPG SRTPGPRRVD MPPDDDWRQS 780
SYASHSGHRR TVGEGFLFVL SDAPRREQIR ARVLQHSQW 819 
Gene Ontology
  
Interpro
  
Pfam
  
SMART
  
PROSITE
  
PRINTS