UniProt Accession

 SDC1_MOUSE; P18828; Q62278; Q9WVD2 

Genbank Protein ID

 X15487; Z22532; AF134897; BC010560; L11565 

Genbank Nucleotide ID

 CAA33514.1; CAA80254.1; AAD42345.1; AAH10560.1; AAA40159.1 

Protein Name

 Syndecan-1 

Protein Synonyms/Alias

 SYND1; CD138 

Gene Name

 Sdc1 

Gene Synonyms/Alias

 Synd-1; Synd1 

Created Date

 July 27, 2013 

Organism

 Mus musculus (Mouse) 

NCBI Taxa ID

 10090 

Lysine Modification

Position	Peptide	Type	References
282	MLYRMKKKDEGSYSL	ubiquitination	[1]
302	ANGGAYQKPTKQEEF	ubiquitination	[1]

Reference

 [1] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023] 

Functional Description

 Cell surface proteoglycan that bears both heparan sulfate and chondroitin sulfate and that links the cytoskeleton to the interstitial matrix. 

Sequence Annotation

 CARBOHYD 37 37 O-linked (Xyl...) (chondroitin sulfate)
 CARBOHYD 43 43 N-linked (GlcNAc...) (Potential).
 CARBOHYD 45 45 O-linked (Xyl...) (heparan sulfate)
 CARBOHYD 47 47 O-linked (Xyl...) (heparan sulfate)
 CARBOHYD 207 207 O-linked (Xyl...) (chondroitin sulfate).
 CARBOHYD 217 217 O-linked (Xyl...) (chondroitin sulfate).  

Keyword

 Alternative splicing; Complete proteome; Glycoprotein; Heparan sulfate; Membrane; Proteoglycan; Reference proteome; Secreted; Signal; Transmembrane; Transmembrane helix. 

Sequence Source

 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 

Protein Length

 311 AA 

Protein Sequence

Gene Ontology

 GO:0009897; C:external side of plasma membrane; IDA:MGI.
 GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell.
 GO:0005925; C:focal adhesion; IEA:Compara.
 GO:0005796; C:Golgi lumen; TAS:Reactome.
 GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
 GO:0043234; C:protein complex; IEA:Compara.
 GO:0060070; P:canonical Wnt receptor signaling pathway; IMP:MGI.
 GO:0048627; P:myoblast development; IDA:UniProtKB.
 GO:0042476; P:odontogenesis; IEA:Compara.
 GO:0051592; P:response to calcium ion; IEA:Compara.
 GO:0051591; P:response to cAMP; IEA:Compara.
 GO:0051384; P:response to glucocorticoid stimulus; IEA:Compara.
 GO:0042542; P:response to hydrogen peroxide; IEA:Compara.
 GO:0009636; P:response to toxic substance; IEA:Compara.
 GO:0060009; P:Sertoli cell development; IEA:Compara.
 GO:0055002; P:striated muscle cell development; IEA:Compara.
 GO:0001657; P:ureteric bud development; IEA:Compara.
 GO:0042060; P:wound healing; IEA:Compara. 

Interpro

 IPR003585; Neurexin-like.
 IPR001050; Syndecan. 

Pfam

 PF01034; Syndecan 

SMART

 SM00294; 4.1m 

PROSITE

 PS00964; SYNDECAN 

PRINTS