CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-032828
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 LIM and senescent cell antigen-like domains 1 isoform D 
Protein Synonyms/Alias
 Protein Lims1 
Gene Name
 Lims1 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Rattus norvegicus (Rat) 
NCBI Taxa ID
 10116 
Lysine Modification
Position
Peptide
Type
References
327TKLTLKNKFVEFDMKacetylation[1]
Reference
 [1] Proteomic analysis of lysine acetylation sites in rat tissues reveals organ specificity and subcellular patterns.
 Lundby A, Lage K, Weinert BT, Bekker-Jensen DB, Secher A, Skovgaard T, Kelstrup CD, Dmytriyev A, Choudhary C, Lundby C, Olsen JV.
 Cell Rep. 2012 Aug 30;2(2):419-31. [PMID: 22902405] 
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; LIM domain; Metal-binding; Reference proteome; Zinc. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 362 AA 
Protein Sequence
MTALQLKELS QSGLYRRRRE RPDSLRVNGL PEEELSNMAN ALASATCERC KGGFDPAEKI 60
VNSNGELYHE QCFVCAQCFQ QFPEGLFYEF EGRKYCEHDF QMLFAPCCHQ CGEFIIGRVI 120
KAMNNSWHPE CFRCDLCQEV LADIGFVKNA GRHLCRPCHN REKARGLGKY ICQKCHAIID 180
EQPLIFKNDP YHPDHFNCAN CGKELTADAR ELKGELYCLP CHDKMGVPIC GACRRPIEGR 240
VVNAMGKQWH VEHFVCAKCE KPFLGHRHYE RKGLAYCETH YNQLFGDVCF HCNRVIEGDV 300
VSALNKAWCV SCFACSTCNT KLTLKNKFVE FDMKPVCKKC YEKFPLELKK RLKKLSETLG 360
RK 362 
Gene Ontology
 GO:0005925; C:focal adhesion; IEA:Compara.
 GO:0043234; C:protein complex; IDA:RGD.
 GO:0019904; F:protein domain specific binding; IC:RGD.
 GO:0008270; F:zinc ion binding; IEA:InterPro.
 GO:0016337; P:cell-cell adhesion; IEA:Compara.
 GO:0007160; P:cell-matrix adhesion; IEA:Compara.
 GO:0043009; P:chordate embryonic development; IEA:Compara.
 GO:0007163; P:establishment or maintenance of cell polarity; IEA:Compara.
 GO:0051291; P:protein heterooligomerization; IDA:RGD. 
Interpro
 IPR017351; PINCH.
 IPR001781; Znf_LIM. 
Pfam
 PF00412; LIM 
SMART
 SM00132; LIM 
PROSITE
 PS00478; LIM_DOMAIN_1
 PS50023; LIM_DOMAIN_2 
PRINTS