CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-002449
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Neurofilament light polypeptide 
Protein Synonyms/Alias
 NF-L; 68 kDa neurofilament protein; Neurofilament triplet L protein 
Gene Name
 NEFL 
Gene Synonyms/Alias
 NF68; NFL 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
15PYYSTSYKRRYVETPubiquitination[1, 2]
91KSIRTQEKAQLQDLNubiquitination[3]
157AEDATNEKQALQGERubiquitination[3]
271QYEKLAAKNMQNAEEubiquitination[1, 2]
370SEMARYLKEYQDLLNubiquitination[1, 2]
Reference
 [1] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [2] hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.
 Chen Z, Zhou Y, Song J, Zhang Z.
 Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. [PMID: 23603789]
 [3] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983
Functional Description
 Neurofilaments usually contain three intermediate filament proteins: L, M, and H which are involved in the maintenance of neuronal caliber. 
Sequence Annotation
 REGION 2 92 Head.
 REGION 93 396 Rod.
 REGION 93 124 Coil 1A.
 REGION 125 137 Linker 1.
 REGION 138 234 Coil 1B.
 REGION 235 252 Linker 12.
 REGION 253 271 Coil 2A.
 REGION 272 280 Linker 2.
 REGION 281 396 Coil 2B.
 REGION 381 391 Epitope; recognized by IF-specific
 REGION 397 543 Tail.
 REGION 397 443 Tail, subdomain A.
 REGION 444 543 Tail, subdomain B (acidic).
 MOD_RES 2 2 N-acetylserine (By similarity).
 MOD_RES 43 43 Phosphotyrosine (By similarity).
 MOD_RES 56 56 Phosphoserine (By similarity).
 MOD_RES 67 67 Phosphoserine (By similarity).
 MOD_RES 424 424 Phosphotyrosine (By similarity).
 MOD_RES 432 432 Phosphotyrosine (By similarity).
 MOD_RES 472 472 Phosphoserine (By similarity).
 CARBOHYD 21 21 O-linked (GlcNAc) (By similarity).
 CARBOHYD 27 27 O-linked (GlcNAc) (By similarity).  
Keyword
 Acetylation; Charcot-Marie-Tooth disease; Coiled coil; Complete proteome; Direct protein sequencing; Disease mutation; Glycoprotein; Intermediate filament; Neuropathy; Phosphoprotein; Polymorphism; Reference proteome; Ubl conjugation. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 543 AA 
Protein Sequence
MSSFSYEPYY STSYKRRYVE TPRVHISSVR SGYSTARSAY SSYSAPVSSS LSVRRSYSSS 60
SGSLMPSLEN LDLSQVAAIS NDLKSIRTQE KAQLQDLNDR FASFIERVHE LEQQNKVLEA 120
ELLVLRQKHS EPSRFRALYE QEIRDLRLAA EDATNEKQAL QGEREGLEET LRNLQARYEE 180
EVLSREDAEG RLMEARKGAD EAALARAELE KRIDSLMDEI SFLKKVHEEE IAELQAQIQY 240
AQISVEMDVT KPDLSAALKD IRAQYEKLAA KNMQNAEEWF KSRFTVLTES AAKNTDAVRA 300
AKDEVSESRR LLKAKTLEIE ACRGMNEALE KQLQELEDKQ NADISAMQDT INKLENELRT 360
TKSEMARYLK EYQDLLNVKM ALDIEIAAYR KLLEGEETRL SFTSVGSITS GYSQSSQVFG 420
RSAYGGLQTS SYLMSTRSFP SYYTSHVQEE QIEVEETIEA AKAEEAKDEP PSEGEAEEEE 480
KDKEEAEEEE AAEEEEAAKE ESEEAKEEEE GGEGEEGEET KEAEEEEKKV EGAGEEQAAK 540
KKD 543 
Gene Ontology
 GO:0005829; C:cytosol; TAS:Reactome.
 GO:0005883; C:neurofilament; IDA:UniProtKB.
 GO:0005200; F:structural constituent of cytoskeleton; IDA:UniProtKB.
 GO:0008089; P:anterograde axon cargo transport; IMP:UniProtKB.
 GO:0019896; P:axon transport of mitochondrion; IMP:UniProtKB.
 GO:0033693; P:neurofilament bundle assembly; IDA:UniProtKB.
 GO:0008090; P:retrograde axon cargo transport; IMP:UniProtKB.
 GO:0007268; P:synaptic transmission; TAS:Reactome. 
Interpro
 IPR016044; F.
 IPR001664; IF.
 IPR006821; Intermed_filament_DNA-bd.
 IPR018039; Intermediate_filament_CS. 
Pfam
 PF00038; Filament
 PF04732; Filament_head 
SMART
  
PROSITE
 PS00226; IF 
PRINTS