CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-008559
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Acetyl-coenzyme A synthetase 2 
Protein Synonyms/Alias
 Acetate--CoA ligase 2; Acyl-activating enzyme 2 
Gene Name
 ACS2 
Gene Synonyms/Alias
 YLR153C; L9634.10 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
7*MTIKEHKVVYEAHNacetylation[1]
16VYEAHNVKALKAPQHacetylation[1]
19AHNVKALKAPQHFYNacetylation[1]
107HAFANPDKPALIYEAacetylation[1]
205VITCDEGKRGGKTINacetylation[1]
205VITCDEGKRGGKTINubiquitination[2]
215GKTINTKKIVDEGLNacetylation[1]
388VGEAEIAKYDTSSLRacetylation[1]
388VGEAEIAKYDTSSLRubiquitination[2]
506RYMDTYLKPYPGHYFacetylation[1]
506RYMDTYLKPYPGHYFubiquitination[3, 4, 5]
622IGPFASPKTIILVRDacetylation[1]
Reference
 [1] Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae.
 Henriksen P, Wagner SA, Weinert BT, Sharma S, Bacinskaja G, Rehman M, Juffer AH, Walther TC, Lisby M, Choudhary C.
 Mol Cell Proteomics. 2012 Nov;11(11):1510-22. [PMID: 22865919]
 [2] Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.
 Swaney DL, Beltrao P, Starita L, Guo A, Rush J, Fields S, Krogan NJ, VillĂ©n J.
 Nat Methods. 2013 Jul;10(7):676-82. [PMID: 23749301]
 [3] A proteomics approach to understanding protein ubiquitination.
 Peng J, Schwartz D, Elias JE, Thoreen CC, Cheng D, Marsischky G, Roelofs J, Finley D, Gygi SP.
 Nat Biotechnol. 2003 Aug;21(8):921-6. [PMID: 12872131]
 [4] Computational identification of ubiquitylation sites from protein sequences.
 Tung CW, Ho SY.
 BMC Bioinformatics. 2008 Jul 15;9:310. [PMID: 18625080]
 [5] Identification, analysis, and prediction of protein ubiquitination sites.
 Radivojac P, Vacic V, Haynes C, Cocklin RR, Mohan A, Heyen JW, Goebl MG, Iakoucheva LM.
 Proteins. 2010 Feb 1;78(2):365-80. [PMID: 19722269
Functional Description
 Catalyzes the production of acetyl-CoA. Provides the acetyl-CoA source for histone acetylation in the nucleus. "Anaerobic" isozyme of acetyl-coenzyme A synthetase, which is required for growth on fermentable carbon sources such as glucose. May be involved in the PDH (pyruvate dehydrogenase complex) bypass. 
Sequence Annotation
 NP_BIND 425 430 AMP (By similarity).
 BINDING 516 516 AMP (By similarity).
 BINDING 531 531 AMP (By similarity).
 MOD_RES 679 679 Phosphoserine.
 CROSSLNK 506 506 Glycyl lysine isopeptide (Lys-Gly)  
Keyword
 ATP-binding; Complete proteome; Cytoplasm; Isopeptide bond; Ligase; Nucleotide-binding; Nucleus; Phosphoprotein; Reference proteome; Ubl conjugation. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 683 AA 
Protein Sequence
MTIKEHKVVY EAHNVKALKA PQHFYNSQPG KGYVTDMQHY QEMYQQSINE PEKFFDKMAK 60
EYLHWDAPYT KVQSGSLNNG DVAWFLNGKL NASYNCVDRH AFANPDKPAL IYEADDESDN 120
KIITFGELLR KVSQIAGVLK SWGVKKGDTV AIYLPMIPEA VIAMLAVARI GAIHSVVFAG 180
FSAGSLKDRV VDANSKVVIT CDEGKRGGKT INTKKIVDEG LNGVDLVSRI LVFQRTGTEG 240
IPMKAGRDYW WHEEAAKQRT YLPPVSCDAE DPLFLLYTSG STGSPKGVVH TTGGYLLGAA 300
LTTRYVFDIH PEDVLFTAGD VGWITGHTYA LYGPLTLGTA SIIFESTPAY PDYGRYWRII 360
QRHKATHFYV APTALRLIKR VGEAEIAKYD TSSLRVLGSV GEPISPDLWE WYHEKVGNKN 420
CVICDTMWQT ESGSHLIAPL AGAVPTKPGS ATVPFFGINA CIIDPVTGVE LEGNDVEGVL 480
AVKSPWPSMA RSVWNHHDRY MDTYLKPYPG HYFTGDGAGR DHDGYYWIRG RVDDVVNVSG 540
HRLSTSEIEA SISNHENVSE AAVVGIPDEL TGQTVVAYVS LKDGYLQNNA TEGDAEHITP 600
DNLRRELILQ VRGEIGPFAS PKTIILVRDL PRTRSGKIMR RVLRKVASNE AEQLGDLTTL 660
ANPEVVPAII SAVENQFFSQ KKK 683 
Gene Ontology
 GO:0005829; C:cytosol; IDA:SGD.
 GO:0005730; C:nucleolus; IDA:SGD.
 GO:0003987; F:acetate-CoA ligase activity; IDA:SGD.
 GO:0016880; F:acid-ammonia (or amide) ligase activity; IDA:SGD.
 GO:0016208; F:AMP binding; IEA:InterPro.
 GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
 GO:0006085; P:acetyl-CoA biosynthetic process; IDA:SGD.
 GO:0019427; P:acetyl-CoA biosynthetic process from acetate; IEA:InterPro.
 GO:0016573; P:histone acetylation; IMP:SGD.
 GO:0006090; P:pyruvate metabolic process; IEA:UniProtKB-UniPathway.
 GO:0001302; P:replicative cell aging; IMP:SGD. 
Interpro
 IPR011904; Ac_CoA_lig.
 IPR024597; Acyl-CoA_synth_DUF3448.
 IPR020845; AMP-binding_CS.
 IPR000873; AMP-dep_Synth/Lig.
 IPR025110; DUF4009. 
Pfam
 PF00501; AMP-binding
 PF11930; DUF3448
 PF13193; DUF4009 
SMART
  
PROSITE
 PS00455; AMP_BINDING 
PRINTS