CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-016065
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 WD repeat domain phosphoinositide-interacting protein 2 
Protein Synonyms/Alias
 WIPI-2 
Gene Name
 Wipi2 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
198AFDASGTKLATASEKubiquitination[1]
323CSLTTIQKIPRLLVGubiquitination[1]
Reference
 [1] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023
Functional Description
 Probable early component of the autophagy machinery being involved in formation of preautophagosomal structures and their maturation into mature phagosomes in response to PtdIns3P (By similarity). 
Sequence Annotation
 REPEAT 182 222 WD 1.
 REPEAT 228 267 WD 2.
 REPEAT 311 349 WD 3.
 MOD_RES 394 394 Phosphoserine.
 MOD_RES 395 395 Phosphoserine.  
Keyword
 Autophagy; Complete proteome; Membrane; Phosphoprotein; Reference proteome; Repeat; WD repeat. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 445 AA 
Protein Sequence
MNLASQSGEA GAGQLLFANF NQDNTSLAVG SKSGYKFFSL SSVDKLEQIY ECTDTEDVCI 60
VERLFSSSLV AIVSLKAPRK LKVCHFKKGT EICNYSYSNT ILAVKLNRQR LIVCLEESLY 120
IHNIRDMKVL HTIRETPPNP AGLCALSINN DNCYLAYPGS ASIGEVQVFD TINLRAANMI 180
PAHDSPLAAL AFDASGTKLA TASEKGTVIR VFSIPEGQKL FEFRRGVKRC VSICSLAFSM 240
DGMFLSASSN TETVHIFKLE AVREKPPEEP TTWTGYFGKV LMASTSYLPS QVTEMFNQGR 300
AFATVRLPFC GHKNICSLTT IQKIPRLLVG ASDGYLYMYN LDPQEGGECA LMRQHRLDGS 360
METTSEIVDS ASHDCPLATQ TYGTAAAKGA YVPSSPTRLG KGQDANLEAY TDDLGAVGGA 420
CLEDEASALR LDEDSEHPPM ILRTD 445 
Gene Ontology
 GO:0000421; C:autophagic vacuole membrane; IBA:RefGenome.
 GO:0005829; C:cytosol; ISS:UniProtKB.
 GO:0005634; C:nucleus; IEA:Compara.
 GO:0034045; C:pre-autophagosomal structure membrane; ISS:UniProtKB.
 GO:0043234; C:protein complex; IEA:Compara.
 GO:0080025; F:phosphatidylinositol-3,5-bisphosphate binding; ISS:UniProtKB.
 GO:0032266; F:phosphatidylinositol-3-phosphate binding; ISS:UniProtKB.
 GO:0000045; P:autophagic vacuole assembly; ISS:UniProtKB. 
Interpro
 IPR015943; WD40/YVTN_repeat-like_dom.
 IPR001680; WD40_repeat.
 IPR017986; WD40_repeat_dom. 
Pfam
 PF00400; WD40 
SMART
 SM00320; WD40 
PROSITE
 PS00678; WD_REPEATS_1
 PS50082; WD_REPEATS_2
 PS50294; WD_REPEATS_REGION 
PRINTS