CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-013720
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Nucleoside diphosphate kinase 
Protein Synonyms/Alias
 NDK; NDP kinase; Nucleoside-2-P kinase 
Gene Name
 ndk 
Gene Synonyms/Alias
 GK2209 
Created Date
 July 27, 2013 
Organism
 Geobacillus kaustophilus (strain HTA426) 
NCBI Taxa ID
 235909 
Lysine Modification
Position
Peptide
Type
References
10ERTFIMVKPDGVQRNacetylation[1]
125SDSPQSAKREISLFFacetylation[1]
Reference
 [1] Proteomic analysis of acetylation in thermophilic Geobacillus kaustophilus.
 Lee DW, Kim D, Lee YJ, Kim JA, Choi JY, Kang S, Pan JG.
 Proteomics. 2013 Aug;13(15):2278-82. [PMID: 23696451
Functional Description
 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate (By similarity). 
Sequence Annotation
 ACT_SITE 116 116 Pros-phosphohistidine intermediate (By
 BINDING 10 10 ATP (By similarity).
 BINDING 58 58 ATP (By similarity).
 BINDING 86 86 ATP (By similarity).
 BINDING 92 92 ATP (By similarity).
 BINDING 103 103 ATP (By similarity).
 BINDING 113 113 ATP (By similarity).
 MOD_RES 92 92 Phosphothreonine (By similarity).
 MOD_RES 123 123 Phosphoserine (By similarity).  
Keyword
 ATP-binding; Complete proteome; Cytoplasm; Kinase; Magnesium; Metal-binding; Nucleotide metabolism; Nucleotide-binding; Phosphoprotein; Transferase. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 149 AA 
Protein Sequence
MAERTFIMVK PDGVQRNLIG EIVARFEKKG FQLVGAKLMQ VSRELAEQHY AEHKERPFFG 60
ELVDFITSGP VFAMVWEGEN VIAAARQMMG KTNPQEAAPG TIRGDFGLTV GKNVIHGSDS 120
PQSAKREISL FFKEEELVSY SKQINAWLY 149 
Gene Ontology
 GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
 GO:0005524; F:ATP binding; IEA:HAMAP.
 GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
 GO:0004550; F:nucleoside diphosphate kinase activity; IEA:HAMAP.
 GO:0006241; P:CTP biosynthetic process; IEA:HAMAP.
 GO:0006183; P:GTP biosynthetic process; IEA:HAMAP.
 GO:0006228; P:UTP biosynthetic process; IEA:HAMAP. 
Interpro
 IPR001564; Nucleoside_diP_kinase.
 IPR023005; Nucleoside_diP_kinase_AS. 
Pfam
 PF00334; NDK 
SMART
 SM00562; NDK 
PROSITE
 PS00469; NDP_KINASES 
PRINTS
 PR01243; NUCDPKINASE.