CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-005048
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Malate dehydrogenase, cytoplasmic 
Protein Synonyms/Alias
  
Gene Name
 MDH2 
Gene Synonyms/Alias
 YOL126C 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
42AQLQYQLKESNRSVTubiquitination[1]
180RRIMGVTKLDIVRASubiquitination[1]
254YGGDEVVKAKNGKGSubiquitination[1]
259VVKAKNGKGSATLSMubiquitination[1]
Reference
 [1] Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.
 Swaney DL, Beltrao P, Starita L, Guo A, Rush J, Fields S, Krogan NJ, VillĂ©n J.
 Nat Methods. 2013 Jul;10(7):676-82. [PMID: 23749301
Functional Description
 The isoenzyme MDH2 may function primarily in the glyoxylate cycle. 
Sequence Annotation
 NP_BIND 20 26 NAD (By similarity).
 NP_BIND 144 146 NAD (By similarity).
 ACT_SITE 215 215 Proton acceptor (By similarity).
 BINDING 57 57 NAD (By similarity).
 BINDING 106 106 Substrate (By similarity).
 BINDING 112 112 Substrate (By similarity).
 BINDING 119 119 NAD (By similarity).
 BINDING 146 146 Substrate (By similarity).
 BINDING 185 185 Substrate (By similarity).
 BINDING 266 266 NAD (By similarity).
 MOD_RES 6 6 Phosphothreonine.  
Keyword
 Complete proteome; Cytoplasm; Direct protein sequencing; NAD; Oxidoreductase; Phosphoprotein; Reference proteome; Tricarboxylic acid cycle. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 377 AA 
Protein Sequence
MPHSVTPSIE QDSLKIAILG AAGGIGQSLS LLLKAQLQYQ LKESNRSVTH IHLALYDVNQ 60
EAINGVTADL SHIDTPISVS SHSPAGGIEN CLHNASIVVI PAGVPRKPGM TRDDLFNVNA 120
GIISQLGDSI AECCDLSKVF VLVISNPVNS LVPVMVSNIL KNHPQSRNSG IERRIMGVTK 180
LDIVRASTFL REINIESGLT PRVNSMPDVP VIGGHSGETI IPLFSQSNFL SRLNEDQLKY 240
LIHRVQYGGD EVVKAKNGKG SATLSMAHAG YKCVVQFVSL LLGNIEQIHG TYYVPLKDAN 300
NFPIAPGADQ LLPLVDGADY FAIPLTITTK GVSYVDYDIV NRMNDMERNQ MLPICVSQLK 360
KNIDKGLEFV ASRSASS 377 
Gene Ontology
 GO:0005829; C:cytosol; IDA:SGD.
 GO:0030060; F:L-malate dehydrogenase activity; IDA:SGD.
 GO:0044262; P:cellular carbohydrate metabolic process; IEA:InterPro.
 GO:0006094; P:gluconeogenesis; IMP:SGD.
 GO:0006108; P:malate metabolic process; TAS:SGD.
 GO:0016558; P:protein import into peroxisome matrix; IMP:SGD.
 GO:0006099; P:tricarboxylic acid cycle; IEA:UniProtKB-KW. 
Interpro
 IPR001557; L-lactate/malate_DH.
 IPR022383; Lactate/malate_DH_C.
 IPR001236; Lactate/malate_DH_N.
 IPR015955; Lactate_DH/Glyco_Ohase_4_C.
 IPR001252; Malate_DH_AS.
 IPR010097; Malate_DH_type1.
 IPR016040; NAD(P)-bd_dom. 
Pfam
 PF02866; Ldh_1_C
 PF00056; Ldh_1_N 
SMART
  
PROSITE
 PS00068; MDH 
PRINTS