CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-025434
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Protein Upf3b 
Protein Synonyms/Alias
  
Gene Name
 Upf3b 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
205TPLLSFLKNKQRMREubiquitination[1]
Reference
 [1] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023] 
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 472 AA 
Protein Sequence
MKEEKDHRPK EKRVTLFTPQ GATGGCIGAT AEGAKGDDRQ DRNRDKKEAL SKVVIRRLPP 60
TLTKEQLQEH LQPMPEHDYF EFFSNDTSLY PHMYARAYIN FKNQEDILLF RDRFDGYVFL 120
DNKGQEYHAI VEFAPFQKAA KKKIKKRDTK VGTIEDDPEY RKFLESYATD NEKMTSTPET 180
LLEEIEAKNR ELIAKRTTPL LSFLKNKQRM REEKREERRR REIERKRQRE EERRKWKEEE 240
KRKRKDIEKL KKIERIPERE KIRDEPKIKL LRKPEKGDEK ELDKRDKTKR LDKENLNEER 300
ASGHSYTLPR RSDVELKDEK PKRLDDEGVR DYRDRDRDYE RDQERMIRER ERLKRQEEER 360
RRQQQKERYE KEKAFKRKEE EMKREKEALR DKGKKSENTE SICSLEKIEK KEEVVKRDRI 420
RNKDRPAMQL YQPGARSRSR LCPADDSIKP GDSPVDKKQE SGISHRKEGG EE 472 
Gene Ontology
 GO:0005737; C:cytoplasm; IEA:Compara.
 GO:0035145; C:exon-exon junction complex; IEA:Compara.
 GO:0003729; F:mRNA binding; IEA:Compara.
 GO:0000166; F:nucleotide binding; IEA:InterPro.
 GO:0045727; P:positive regulation of translation; IEA:Compara. 
Interpro
 IPR005120; Nonsense_mediated_decay_UPF3.
 IPR012677; Nucleotide-bd_a/b_plait. 
Pfam
 PF03467; Smg4_UPF3 
SMART
  
PROSITE
  
PRINTS