CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-021588
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Transcription factor IIIB 50 kDa subunit 
Protein Synonyms/Alias
 TFIIIB50; hTFIIIB50; B-related factor 2; BRF-2; hBRFU 
Gene Name
 BRF2 
Gene Synonyms/Alias
 BRFU; PRO1470 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
192ASPSVPAKYVEDKEKubiquitination[1, 2]
199KYVEDKEKMLSRTMQubiquitination[2]
295LDKRSVVKHIGDLLQubiquitination[2, 3]
324AEVETREKEPPGWGQubiquitination[1, 2]
Reference
 [1] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [2] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [3] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302
Functional Description
 General activator of RNA polymerase III transcription. Factor exclusively required for RNA polymerase III transcription of genes with promoter elements upstream of the initiation sites. 
Sequence Annotation
 REPEAT 72 157 1.
 REPEAT 173 249 2.
 ZN_FING 2 36 TFIIB-type.
 METAL 7 7 Zinc (By similarity).
 METAL 10 10 Zinc (By similarity).
 METAL 28 28 Zinc (By similarity).
 METAL 31 31 Zinc (By similarity).  
Keyword
 Activator; Complete proteome; Metal-binding; Nucleus; Reference proteome; Repeat; Transcription; Transcription regulation; Zinc; Zinc-finger. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 419 AA 
Protein Sequence
MPGRGRCPDC GSTELVEDSH YSQSQLVCSD CGCVVTEGVL TTTFSDEGNL REVTYSRSTG 60
ENEQVSRSQQ RGLRRVRDLC RVLQLPPTFE DTAVAYYQQA YRHSGIRAAR LQKKEVLVGC 120
CVLITCRQHN WPLTMGAICT LLYADLDVFS STYMQIVKLL GLDVPSLCLA ELVKTYCSSF 180
KLFQASPSVP AKYVEDKEKM LSRTMQLVEL ANETWLVTGR HPLPVITAAT FLAWQSLQPA 240
DRLSCSLARF CKLANVDLPY PASSRLQELL AVLLRMAEQL AWLRVLRLDK RSVVKHIGDL 300
LQHRQSLVRS AFRDGTAEVE TREKEPPGWG QGQGEGEVGN NSLGLPQGKR PASPALLLPP 360
CMLKSPKRIC PVPPVSTVTG DENISDSEIE QYLRTPQEVR DFQRAQAARQ AATSVPNPP 419 
Gene Ontology
 GO:0005654; C:nucleoplasm; TAS:Reactome.
 GO:0008270; F:zinc ion binding; IEA:InterPro.
 GO:0006352; P:DNA-dependent transcription, initiation; IEA:InterPro.
 GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.
 GO:0006383; P:transcription from RNA polymerase III promoter; TAS:Reactome. 
Interpro
 IPR013763; Cyclin-like.
 IPR000812; TFIIB.
 IPR013137; Znf_TFIIB. 
Pfam
 PF08271; TF_Zn_Ribbon 
SMART
 SM00385; CYCLIN 
PROSITE
 PS00782; TFIIB
 PS51134; ZF_TFIIB 
PRINTS