CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-038560
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 Lysine-specific demethylase 5B 
Protein Synonyms/Alias
  
Gene Name
 Kdm5b 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
100LEAQTRVKLNFLDQIubiquitination[1]
Reference
 [1] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023] 
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Metal-binding; Nucleus; Reference proteome; Zinc; Zinc-finger. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 600 AA 
Protein Sequence
MEPATTLPPG PRPALPLGGP GPLGEFLPPP ECPVFEPSWE EFADPFAFIH KIRPIAEQTG 60
ICKVRPPPDW QPPFACDVDK LHFTPRIQRL NELEAQTRVK LNFLDQIAKY WELQGSTLKI 120
PHVERKILDL FQLNKLVAEE GGFAVVCKDR KWTKIATKMG FAPGKAVGSH IRGHYERILN 180
PYNLFLSGDS LRKPNLTSDT KDKEYKPHDI PQRQSVQPAE TCPPARRAKR MRAEAMNIKI 240
EPEEATEART HNLRRRMGCT TPKWENEKEM KSTIKQEPTE KKDCELESEK EKPKSRAKKT 300
ATAVDLYVCL LCGSGNDEDR LLLCDGCDDS YHTFCLVPPL HDVPKGDWRC PKCLAQECNK 360
PQEAFGFEQA ARDYTLRTFG EMADAFKSDY FNMPVHMVPT ELVEKEFWRL VSTIEEDVTV 420
EYGADIASKE FGSGFPVRDG KIKISPEEEE YLDSGWNLNN MPVMEQSVLA HITADICGMK 480
LPWLYVGMCF SSFCWHIEDH WSYSINYLHW GEPKTWYGVP GYAAEQLENV MKKLAPELFV 540
SQPDLLHQLV TIMNPNTLMT HEVPVCRADL LAAPPTVHSF PSTPAFLLKV IWCFPPHNIT 600 
Gene Ontology
 GO:0005634; C:nucleus; IEA:UniProtKB-KW.
 GO:0003677; F:DNA binding; IEA:InterPro.
 GO:0032453; F:histone demethylase activity (H3-K4 specific); IDA:MGI.
 GO:0008270; F:zinc ion binding; IEA:InterPro. 
Interpro
 IPR001606; ARID/BRIGHT_DNA-bd.
 IPR003347; JmjC_dom.
 IPR003349; TF_JmjN.
 IPR019786; Zinc_finger_PHD-type_CS.
 IPR011011; Znf_FYVE_PHD.
 IPR001965; Znf_PHD.
 IPR019787; Znf_PHD-finger.
 IPR013083; Znf_RING/FYVE/PHD. 
Pfam
 PF01388; ARID
 PF02373; JmjC
 PF02375; JmjN
 PF00628; PHD 
SMART
 SM00501; BRIGHT
 SM00558; JmjC
 SM00545; JmjN
 SM00249; PHD 
PROSITE
 PS51011; ARID
 PS51184; JMJC
 PS51183; JMJN
 PS01359; ZF_PHD_1
 PS50016; ZF_PHD_2 
PRINTS