CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-004573
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Malate dehydrogenase, mitochondrial 
Protein Synonyms/Alias
  
Gene Name
 MDH1 
Gene Synonyms/Alias
 YKL085W 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
233FGGDEVVKAKNGAGSacetylation[1]
261NAVLSGFKGERDVIEacetylation[1]
278FVDSPLFKSEGIEFFubiquitination[2]
326TLKKNIEKGVNFVASacetylation[1]
Reference
 [1] Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae.
 Henriksen P, Wagner SA, Weinert BT, Sharma S, Bacinskaja G, Rehman M, Juffer AH, Walther TC, Lisby M, Choudhary C.
 Mol Cell Proteomics. 2012 Nov;11(11):1510-22. [PMID: 22865919]
 [2] Sites of ubiquitin attachment in Saccharomyces cerevisiae.
 Starita LM, Lo RS, Eng JK, von Haller PD, Fields S.
 Proteomics. 2012 Jan;12(2):236-40. [PMID: 22106047
Functional Description
  
Sequence Annotation
 NP_BIND 24 30 NAD (By similarity).
 NP_BIND 135 137 NAD (By similarity).
 ACT_SITE 195 195 Proton acceptor (By similarity).
 BINDING 50 50 NAD (By similarity).
 BINDING 99 99 Substrate (By similarity).
 BINDING 105 105 Substrate (By similarity).
 BINDING 112 112 NAD (By similarity).
 BINDING 137 137 Substrate (By similarity).
 BINDING 171 171 Substrate (By similarity).
 BINDING 245 245 NAD (By similarity).
 MOD_RES 177 177 Phosphoserine.
 MOD_RES 199 199 Phosphothreonine.  
Keyword
 3D-structure; Complete proteome; Direct protein sequencing; Mitochondrion; NAD; Oxidoreductase; Phosphoprotein; Reference proteome; Transit peptide; Tricarboxylic acid cycle. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 334 AA 
Protein Sequence
MLSRVAKRAF SSTVANPYKV TVLGAGGGIG QPLSLLLKLN HKVTDLRLYD LKGAKGVATD 60
LSHIPTNSVV KGFTPEEPDG LNNALKDTDM VLIPAGVPRK PGMTRDDLFA INASIVRDLA 120
AATAESAPNA AILVISNPVN STVPIVAQVL KNKGVYNPKK LFGVTTLDSI RAARFISEVE 180
NTDPTQERVN VIGGHSGITI IPLISQTNHK LMSDDKRHEL IHRIQFGGDE VVKAKNGAGS 240
ATLSMAHAGA KFANAVLSGF KGERDVIEPS FVDSPLFKSE GIEFFASPVT LGPDGIEKIH 300
PIGELSSEEE EMLQKCKETL KKNIEKGVNF VASK 334 
Gene Ontology
 GO:0005759; C:mitochondrial matrix; IDA:SGD.
 GO:0030060; F:L-malate dehydrogenase activity; IDA:SGD.
 GO:0003729; F:mRNA binding; IDA:SGD.
 GO:0044262; P:cellular carbohydrate metabolic process; IEA:InterPro.
 GO:0001300; P:chronological cell aging; IMP:SGD.
 GO:0006108; P:malate metabolic process; IEA:InterPro.
 GO:0001302; P:replicative cell aging; IMP:SGD.
 GO:0006099; P:tricarboxylic acid cycle; IMP:SGD. 
Interpro
 IPR001557; L-lactate/malate_DH.
 IPR022383; Lactate/malate_DH_C.
 IPR001236; Lactate/malate_DH_N.
 IPR015955; Lactate_DH/Glyco_Ohase_4_C.
 IPR001252; Malate_DH_AS.
 IPR010097; Malate_DH_type1.
 IPR016040; NAD(P)-bd_dom. 
Pfam
 PF02866; Ldh_1_C
 PF00056; Ldh_1_N 
SMART
  
PROSITE
 PS00068; MDH 
PRINTS