CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-005125
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Porphobilinogen deaminase 
Protein Synonyms/Alias
 PBG-D; Hydroxymethylbilane synthase; HMBS; Pre-uroporphyrinogen synthase 
Gene Name
 Hmbs 
Gene Synonyms/Alias
 Uros1 
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
70ILDTALSKIGEKSLFubiquitination[1]
74ALSKIGEKSLFTKELacetylation[2, 3]
79GEKSLFTKELENALEubiquitination[1]
128DAVVFHPKFIGKTLEubiquitination[1]
132FHPKFIGKTLETLPEacetylation[4]
140TLETLPEKSAVGTSSubiquitination[1]
Reference
 [1] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023]
 [2] Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3.
 Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C.
 PLoS One. 2012;7(12):e50545. [PMID: 23236377]
 [3] SIRT5-Mediated Lysine Desuccinylation Impacts Diverse Metabolic Pathways.
 Park J, Chen Y, Tishkoff DX, Peng C, Tan M, Dai L, Xie Z, Zhang Y, Zwaans BM, Skinner ME, Lombard DB, Zhao Y.
 Mol Cell. 2013 Jun 27;50(6):919-30. [PMID: 23806337]
 [4] Quantitative acetylome analysis reveals the roles of SIRT1 in regulating diverse substrates and cellular pathways.
 Chen Y, Zhao W, Yang JS, Cheng Z, Luo H, Lu Z, Tan M, Gu W, Zhao Y.
 Mol Cell Proteomics. 2012 Oct;11(10):1048-62. [PMID: 22826441
Functional Description
 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. 
Sequence Annotation
 MOD_RES 2 2 N-acetylserine (By similarity).
 MOD_RES 261 261 S-(dipyrrolylmethanemethyl)cysteine (By  
Keyword
 Acetylation; Alternative splicing; Complete proteome; Heme biosynthesis; Porphyrin biosynthesis; Reference proteome; Transferase. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 361 AA 
Protein Sequence
MSGNGGAATT AEENGSKMRV IRVGTRKSQL ARIQTDTVVA MLKALYPGIQ FEIIAMSTTG 60
DKILDTALSK IGEKSLFTKE LENALEKNEV DLVVHSLKDV PTILPPGFTI GAICKRENPC 120
DAVVFHPKFI GKTLETLPEK SAVGTSSLRR VAQLQRKFPH LEFKSIRGNL NTRLRKLDEL 180
QEFSAIVLAV AGLQRMGWQN RVGQILHPEE CMYAVGQGAL AVEVRAKDQD ILDLVSVLHD 240
PETLLRCIAE RAFLRHLEGG CSVPVAVHTV MKDGQLYLTG GVWSLDGSDS MQETMQATIQ 300
VPVQQEDGPE DDPQLVGITA RNIPRGAQLA AENLGISLAS LLLNKGAKNI LDVARQLNDV 360
R 361 
Gene Ontology
 GO:0004418; F:hydroxymethylbilane synthase activity; IEA:EC.
 GO:0018160; P:peptidyl-pyrromethane cofactor linkage; IEA:InterPro.
 GO:0006782; P:protoporphyrinogen IX biosynthetic process; IEA:UniProtKB-UniPathway. 
Interpro
 IPR000860; 4pyrrol_synth_OHMeBilane_synth.
 IPR022419; Porphobilin_deaminase_cofac_BS.
 IPR022417; Porphobilin_deaminase_N.
 IPR022418; Porphobilinogen_deaminase_C. 
Pfam
 PF01379; Porphobil_deam
 PF03900; Porphobil_deamC 
SMART
  
PROSITE
 PS00533; PORPHOBILINOGEN_DEAM 
PRINTS
 PR00151; PORPHBDMNASE.