CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-018452
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Acyl-coenzyme A synthetase ACSM1, mitochondrial 
Protein Synonyms/Alias
 Acyl-CoA synthetase medium-chain family member 1; Butyrate--CoA ligase 1; Butyryl-coenzyme A synthetase 1; Lipoate-activating enzyme; Middle-chain acyl-CoA synthetase 1 
Gene Name
 Acsm1 
Gene Synonyms/Alias
 Bucs1; Lae; Macs1 
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
144GTTQLKAKDILYRIQacetylation[1]
144GTTQLKAKDILYRIQubiquitination[2]
179ASECPDLKTKLVVSDubiquitination[2]
210SPDHTCIKSKMKDPMacetylation[1]
210SPDHTCIKSKMKDPMubiquitination[2]
214TCIKSKMKDPMAIFFubiquitination[2]
230SGTTGYPKMAKHNQGubiquitination[2]
233TGYPKMAKHNQGLAFubiquitination[2]
252PSCRKLLKLKTSDILacetylation[1]
324YRMVLQQKTSNLRFPubiquitination[2]
352PEEYEQWKQRTGLSIacetylation[1]
352PEEYEQWKQRTGLSIubiquitination[2]
387IKRGSIGKAILPFDLacetylation[3, 4, 5]
387IKRGSIGKAILPFDLsuccinylation[4]
387IKRGSIGKAILPFDLubiquitination[2]
501AVVSSPDKDRGEVVKacetylation[1]
527HDQEQLIKELQHHVKacetylation[1]
534KELQHHVKSVTAPYKacetylation[1]
534KELQHHVKSVTAPYKubiquitination[2]
541KSVTAPYKYPRKVEFacetylation[1]
554EFVSELPKTVTGKIKacetylation[1]
559LPKTVTGKIKRKELRacetylation[1]
568KRKELRNKEFGQL**acetylation[3]
Reference
 [1] Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome.
 Hebert AS, Dittenhafer-Reed KE, Yu W, Bailey DJ, Selen ES, Boersma MD, Carson JJ, Tonelli M, Balloon AJ, Higbee AJ, Westphall MS, Pagliarini DJ, Prolla TA, Assadi-Porter F, Roy S, Denu JM, Coon JJ.
 Mol Cell. 2013 Jan 10;49(1):186-99. [PMID: 23201123]
 [2] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023]
 [3] Label-free quantitative proteomics of the lysine acetylome in mitochondria identifies substrates of SIRT3 in metabolic pathways.
 Rardin MJ, Newman JC, Held JM, Cusack MP, Sorensen DJ, Li B, Schilling B, Mooney SD, Kahn CR, Verdin E, Gibson BW.
 Proc Natl Acad Sci U S A. 2013 Apr 16;110(16):6601-6. [PMID: 23576753]
 [4] SIRT5-Mediated Lysine Desuccinylation Impacts Diverse Metabolic Pathways.
 Park J, Chen Y, Tishkoff DX, Peng C, Tan M, Dai L, Xie Z, Zhang Y, Zwaans BM, Skinner ME, Lombard DB, Zhao Y.
 Mol Cell. 2013 Jun 27;50(6):919-30. [PMID: 23806337]
 [5] Quantification of mitochondrial acetylation dynamics highlights prominent sites of metabolic regulation.
 Still AJ, Floyd BJ, Hebert AS, Bingman CA, Carson JJ, Gunderson DR, Dolan BK, Grimsrud PA, Dittenhafer-Reed KE, Stapleton DS, Keller MP, Westphall MS, Denu JM, Attie AD, Coon JJ, Pagliarini DJ.
 J Biol Chem. 2013 Jul 17;. [PMID: 23864654
Functional Description
 Functions as GTP-dependent lipoate-activating enzyme that generates the substrate for lipoyltransferase (By similarity). Has medium-chain fatty acid:CoA ligase activity with broad substrate specificity (in vitro). Acts on acids from C(4) to C(11) and on the corresponding 3-hydroxy- and 2,3- or 3,4- unsaturated acids (in vitro). 
Sequence Annotation
 NP_BIND 222 230 ATP (By similarity).
 BINDING 448 448 ATP (By similarity).
 BINDING 463 463 ATP (By similarity).
 BINDING 559 559 ATP (By similarity).  
Keyword
 Alternative splicing; ATP-binding; Complete proteome; Direct protein sequencing; Fatty acid metabolism; GTP-binding; Ligase; Lipid metabolism; Magnesium; Metal-binding; Mitochondrion; Nucleotide-binding; Reference proteome; Transit peptide. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 573 AA 
Protein Sequence
MQWLKSFQIC KVLQGFSLSP TQLHRRLFSR VGAPRWNDHD SPEEFNFASD VLDYWAQMEE 60
EGKRGPSPAF WWVNGQGDEI KWSFRKLRDL TCRTANVFEQ ICGLQQGDHL ALILPRVPEW 120
WLVTVGCMRT GIIFMPGTTQ LKAKDILYRI QISRAKAIVT TASLVPEVES VASECPDLKT 180
KLVVSDHSHE GWLDFCSLIK SASPDHTCIK SKMKDPMAIF FTSGTTGYPK MAKHNQGLAF 240
RSYIPSCRKL LKLKTSDILW CMSDPGWILA TVGCLIEPWT SGCTVFIHHL PQFDPKVIVE 300
VLFKYPITQC LAAPGVYRMV LQQKTSNLRF PTLEHCTTGG ESLLPEEYEQ WKQRTGLSIH 360
EVYGQSETGI SSATLREMKI KRGSIGKAIL PFDLQIIDEK GNILPPNTEG YIGIRIKPTR 420
PLGLFMEYEN SPESTSEVEC GDFYNSGDRA TIDEEGYIWF LGRGDDVINA SGYRIGPVEV 480
ENALAEHPAV AESAVVSSPD KDRGEVVKAF IVLNPEFLSH DQEQLIKELQ HHVKSVTAPY 540
KYPRKVEFVS ELPKTVTGKI KRKELRNKEF GQL 573 
Gene Ontology
 GO:0005759; C:mitochondrial matrix; ISS:UniProtKB.
 GO:0003996; F:acyl-CoA ligase activity; ISS:UniProtKB.
 GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
 GO:0047760; F:butyrate-CoA ligase activity; ISS:UniProtKB.
 GO:0015645; F:fatty acid ligase activity; IDA:MGI.
 GO:0005525; F:GTP binding; IEA:UniProtKB-KW.
 GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
 GO:0006633; P:fatty acid biosynthetic process; IDA:MGI. 
Interpro
 IPR020845; AMP-binding_CS.
 IPR000873; AMP-dep_Synth/Lig.
 IPR025110; DUF4009. 
Pfam
 PF00501; AMP-binding
 PF13193; DUF4009 
SMART
  
PROSITE
 PS00455; AMP_BINDING 
PRINTS