CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-034734
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 Protein Chd5 
Protein Synonyms/Alias
  
Gene Name
 Chd5 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Rattus norvegicus (Rat) 
NCBI Taxa ID
 10116 
Lysine Modification
Position
Peptide
Type
References
1339DLARNLGKGKRIRKQacetylation[1]
Reference
 [1] Proteomic analysis of lysine acetylation sites in rat tissues reveals organ specificity and subcellular patterns.
 Lundby A, Lage K, Weinert BT, Bekker-Jensen DB, Secher A, Skovgaard T, Kelstrup CD, Dmytriyev A, Choudhary C, Lundby C, Olsen JV.
 Cell Rep. 2012 Aug 30;2(2):419-31. [PMID: 22902405
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Metal-binding; Nucleus; Reference proteome; Zinc; Zinc-finger. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 1948 AA 
Protein Sequence
MRGPLGTEEE LPRLFAEEME NEEEMSEEED GGLEGFEDFF PAEPVSLPKK KPKKLKESKS 60
KGKRKKKEGS NDELSENEED LEEKSESEGS DYSPTKKKKK KLKEKKEKKA KRKKRDEDEE 120
DNEDGGLKEP KSSGQLMAEW GLDDVDYLFS EDDYHTLTNY KAFSQFLRPL IAKKNPKIPM 180
SKMMTVLGAK WREFSANNPF KGSSAAAAAA AVAAAVETVT IAPPLAISPQ QVPQPLPVRK 240
AKTKEGKGPG VRKKNKGAKD SKKKGRGKRV AGLKFRFGGI SKRKKGSSSE EDEPEDSDLD 300
NASIHSSSVR SECSAALGKK NKRRRKKKRI DDGDGYETDH QDYCEVCQQG GEIILCDTCP 360
RAYHLVCLDP ELEKAPEGKW SCPHCEKEGI QWEPKDDDEE EEEGGCEEEE DDHMEFCRVC 420
KDGGELLCCD ACPSSYHLHC LNPPLPEIPN GEWLCPRCTC PPLKGKVQRI LHWRWTEPPA 480
PFMVGLPGPE VEPGMPPPRP LEGIPEREFF VKWAGLSYWH CSWVKELQLE LYHTVMYRNY 540
QRKNDMDEPP PFDYGSGDED GKSEKRKNKD PLYAKMEERF YRYGIKPEWM MVHRILNHSF 600
DKKGDVHYLI KWKDLPYDQC TWEIDEIDIP YYDNLKQTYW GHRELMLGED ARLPKRLVKK 660
GKKLKDDKQE KPPDTPIVDP TVKFDKQPWY IDSTGGTLHP YQLEGLNWLR FSWAQGTDTI 720
LADEMGLGKT VQTIVFLYSL YKEGHSKGPY LVSAPLSTII NWEREFEMWA PDFYVVTYTG 780
DKESRSVIRE NEFSFEDNAI RGGKKVFRMK KEVQIKFHVL LTSYELITID QAILGSIEWA 840
CLVVDEAHRL KNNQSKFFRV LNSYKIDYKL LLTGTPLQNN LEELFHLLNF LTPERFNNLE 900
GFLEEFADIS KEDQIKKLHD LLGPHMLRRL KADVFKNMPA KTELIVRVEL SQMQKKYYKF 960
ILTRNFEALN SKGGGNQVSL LNIMMDLKKC CNHPYLFPVA AVEAPMLPNG SYDGSSLVKS 1020
SGKLMLLQKM LKKLRDEGHR VLIFSQMTKM LDLLEDFLEY EGYKYERIDG GITGGLRQEA 1080
IDRFNAPGAQ QFCFLLSTRA GGLGINLATA DTVIIYDSDW NPHNDIQAFS RAHRIGQNKK 1140
VMIYRFVTRA SVEERITQVA KRKMMLTHLV VRPGLGSKSG SMTKQELDDI LKFGTEELFK 1200
DDVEGMMSQG QRPTTPIPDV QSTKGGSLAA GAKKKHGGTP PGDNKDVEDS SVIHYDDAAI 1260
SKLLDRNQDA TDDTELQNMN EYLSSFKVAQ YVVREEDGVE EVEREVIKQE ENVDPDYWEK 1320
LLRHHYEQQQ EDLARNLGKG KRIRKQVNYN DASQEDQEWQ DELSDNQSEY SIGSEDEDED 1380
FEERPEGQSG RRQSRRQLKS DRDKPLPPLL ARVGGNIEVL GFNARQRKAF LNAIMRWGMP 1440
PQDAFNSHWL VRDLRGKSEK EFRAYVSLFM RHLCEPGADG AETFADGVPR EGLSRQHVLT 1500
RIGVMSLVRK KVQEFEHVNG KYSTPDLVPE GPEGKKPGEV ISSDPNTPVP ASPAQLPPAP 1560
LGLPDKMEAQ LGYTDEKESG TQKPKKSLEI QALPTALDRV EAEDKHQSSD SKDRAREERM 1620
EEVEKAQGSP EQPLKEETLP DKEPVPDKLE LSLSHSNDFR PDDPKAEEKE PTETQQNGDR 1680
EEDEEGKKED KNGKFKFMFN IADGGFTELH TLWQNEERAA VSSGKIYEIW HRRHDYWLLA 1740
GIVTHGYARW QDIQNDPRYM ILNEPFKSEV HKGNYLEMKN KFLARRFKLL EQALVIEEQL 1800
RRAAYLNMTQ DPNHPAMALN ARLAEVECLA ESHQHLSKES LAGNKPANAV LHKVLNQLEE 1860
LLSDMKADVT RLPSMLSRIP PVAARLQMSE RSILSRLTNR AGDPTIQQGA FGSSQMYNNS 1920
FGPNFRGPGP GGIVNYNQMP LGPYVTGR 1948 
Gene Ontology
 GO:0005634; C:nucleus; IEA:UniProtKB-KW.
 GO:0005524; F:ATP binding; IEA:InterPro.
 GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.
 GO:0003677; F:DNA binding; IEA:InterPro.
 GO:0008270; F:zinc ion binding; IEA:InterPro.
 GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro. 
Interpro
 IPR012957; CHD_C2.
 IPR012958; CHD_N.
 IPR023780; Chromo_domain.
 IPR000953; Chromo_domain/shadow.
 IPR016197; Chromodomain-like.
 IPR002464; DNA/RNA_helicase_DEAH_CS.
 IPR009462; DUF1086.
 IPR009463; DUF1087.
 IPR014001; Helicase_ATP-bd.
 IPR001650; Helicase_C.
 IPR027417; P-loop_NTPase.
 IPR000330; SNF2_N.
 IPR019786; Zinc_finger_PHD-type_CS.
 IPR011011; Znf_FYVE_PHD.
 IPR001965; Znf_PHD.
 IPR019787; Znf_PHD-finger.
 IPR001841; Znf_RING.
 IPR013083; Znf_RING/FYVE/PHD. 
Pfam
 PF08074; CHDCT2
 PF08073; CHDNT
 PF00385; Chromo
 PF06461; DUF1086
 PF06465; DUF1087
 PF00271; Helicase_C
 PF00628; PHD
 PF00176; SNF2_N 
SMART
 SM00298; CHROMO
 SM00487; DEXDc
 SM00490; HELICc
 SM00249; PHD
 SM00184; RING 
PROSITE
 PS50013; CHROMO_2
 PS00690; DEAH_ATP_HELICASE
 PS51192; HELICASE_ATP_BIND_1
 PS51194; HELICASE_CTER
 PS01359; ZF_PHD_1
 PS50016; ZF_PHD_2 
PRINTS