| Tag | Content |
|---|
| CPLM ID | CPLM-012902 |
UniProt Accession | |
Genbank Protein ID | |
Genbank Nucleotide ID | |
Protein Name | Probable pre-mRNA-splicing factor ATP-dependent RNA helicase |
Protein Synonyms/Alias | |
Gene Name | At3g26560; MFE16.8 |
Gene Synonyms/Alias | |
Created Date | July 27, 2013 |
Organism | Arabidopsis thaliana (Mouse-ear cress) |
NCBI Taxa ID | 3702 |
Lysine Modification | Position | Peptide | Type | References |
|---|
| 505 | PTFGQRSKLSIQEQR | sumoylation | [1] |
|
Reference | [1] Proteomic analyses identify a diverse array of nuclear processes affected by small ubiquitin-like modifier conjugation in Arabidopsis. Miller MJ, Barrett-Wilt GA, Hua Z, Vierstra RD. Proc Natl Acad Sci U S A. 2010 Sep 21;107(38):16512-7. [ PMID: 20813957] |
Functional Description | Could act late in the splicing of pre-mRNA and mediate the release of the spliced mRNA from spliceosomes (By similarity). |
Sequence Annotation | DOMAIN 214 283 S1 motif.
DOMAIN 525 688 Helicase ATP-binding.
DOMAIN 706 886 Helicase C-terminal.
NP_BIND 538 545 ATP (By similarity).
MOTIF 635 638 DEAH box.
MOD_RES 411 411 Phosphoserine. |
Keyword | ATP-binding; Complete proteome; Helicase; Hydrolase; mRNA processing; mRNA splicing; Nucleotide-binding; Nucleus; Phosphoprotein; Reference proteome. |
Sequence Source | UniProt (SWISSPROT/TrEMBL); GenBank; EMBL |
Protein Length | 1168 AA |
Protein Sequence | MEKEELNKLN HLSLVSNVCN ELETHLGSAE KVLAEFIIDL GRHSETVDEF DKNLKEAGAE 60
MPDYFVRSLL TTIHGIYPPK PKSEKKKEEG DDQKFKGLAI KDTKDKVKEL EKEIEREAEE 120
RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG 180
RGDGGEGEDR RRDRRAKDEY VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE 240
GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS 300
DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG 360
VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL QGQTRYSVDM SPVKIFKNPE 420
GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG 480
LSAYDMPEWK KDAFGKTPTF GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET 540
GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED 600
CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD 660
LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK QPETDYLDAA LITVLQIHLT 720
EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP 780
GKRKVVVATN IAEASLTIDG IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR 840
AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ 900
PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA 960
MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE AWKAKNFSGP WCFENFIQSR 1020
SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN 1080
QPVYIHPSSA LFQRQPDWVI YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS 1140
KRKRQERIEP LYDRYHEPNS WRLSKRRA 1168 |
Gene Ontology | |
Interpro | |
Pfam | |
SMART | |
PROSITE | |
PRINTS | |