CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-022897
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 ATP-binding cassette sub-family F member 2 
Protein Synonyms/Alias
 Iron-inhibited ABC transporter 2 
Gene Name
 ABCF2 
Gene Synonyms/Alias
 HUSSY-18 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
66ELEDFEMKKAAARAVubiquitination[1]
133MLLSAIGKREVPIPEubiquitination[2]
174TERAMLEKEAERLAHubiquitination[1, 2]
188HEDAECEKLMELYERubiquitination[2]
203LEELDADKAEMRASRubiquitination[1, 2]
227AMQRKKLKDFSGGWRubiquitination[2]
304HMHNKKLKYYTGNYDacetylation[3]
315GNYDQYVKTRLELEEubiquitination[1, 2, 4, 5]
326ELEENQMKRFHWEQDubiquitination[1, 2]
339QDQIAHMKNYIARFGubiquitination[2, 4]
351RFGHGSAKLARQAQSubiquitination[2]
365SKEKTLQKMMASGLTubiquitination[1, 2, 4, 5]
436VGPNGAGKSTLLKLLubiquitination[2, 4]
441AGKSTLLKLLTGELLubiquitination[2]
508GRYGLTGKQQVSPIRubiquitination[1, 2, 5]
522RNLSDGQKCRVCLAWubiquitination[1, 6]
588QEIWVCEKQTITKWPubiquitination[2, 6]
602PGDILAYKEHLKSKLubiquitination[1, 2, 4]
606LAYKEHLKSKLVDEEubiquitination[2]
608YKEHLKSKLVDEEPQubiquitination[1, 2]
618DEEPQLTKRTHNV**ubiquitination[1]
Reference
 [1] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [2] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [3] Lysine acetylation targets protein complexes and co-regulates major cellular functions.
 Choudhary C, Kumar C, Gnad F, Nielsen ML, Rehman M, Walther TC, Olsen JV, Mann M.
 Science. 2009 Aug 14;325(5942):834-40. [PMID: 19608861]
 [4] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [5] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661]
 [6] Proteome-wide identification of ubiquitylation sites by conjugation of engineered lysine-less ubiquitin.
 Oshikawa K, Matsumoto M, Oyamada K, Nakayama KI.
 J Proteome Res. 2012 Feb 3;11(2):796-807. [PMID: 22053931
Functional Description
  
Sequence Annotation
 DOMAIN 86 325 ABC transporter 1.
 DOMAIN 396 613 ABC transporter 2.
 NP_BIND 118 125 ATP 1 (By similarity).
 NP_BIND 430 437 ATP 2 (By similarity).
 MOD_RES 304 304 N6-acetyllysine.  
Keyword
 Acetylation; ATP-binding; Complete proteome; Nucleotide-binding; Reference proteome; Repeat. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 623 AA 
Protein Sequence
MPSDLAKKKA AKKKEAAKAR QRPRKGHEEN GDVVTEPQVA EKNEANGRET TEVDLLTKEL 60
EDFEMKKAAA RAVTGVLASH PNSTDVHIIN LSLTFHGQEL LSDTKLELNS GRRYGLIGLN 120
GIGKSMLLSA IGKREVPIPE HIDIYHLTRE MPPSDKTPLH CVMEVDTERA MLEKEAERLA 180
HEDAECEKLM ELYERLEELD ADKAEMRASR ILHGLGFTPA MQRKKLKDFS GGWRMRVALA 240
RALFIRPFML LLDEPTNHLD LDACVWLEEE LKTFKRILVL VSHSQDFLNG VCTNIIHMHN 300
KKLKYYTGNY DQYVKTRLEL EENQMKRFHW EQDQIAHMKN YIARFGHGSA KLARQAQSKE 360
KTLQKMMASG LTERVVSDKT LSFYFPPCGK IPPPVIMVQN VSFKYTKDGP CIYNNLEFGI 420
DLDTRVALVG PNGAGKSTLL KLLTGELLPT DGMIRKHSHV KIGRYHQHLQ EQLDLDLSPL 480
EYMMKCYPEI KEKEEMRKII GRYGLTGKQQ VSPIRNLSDG QKCRVCLAWL AWQNPHMLFL 540
DEPTNHLDIE TIDALADAIN EFEGGMMLVS HDFRLIQQVA QEIWVCEKQT ITKWPGDILA 600
YKEHLKSKLV DEEPQLTKRT HNV 623 
Gene Ontology
 GO:0043190; C:ATP-binding cassette (ABC) transporter complex; TAS:ProtInc.
 GO:0005740; C:mitochondrial envelope; TAS:ProtInc.
 GO:0005524; F:ATP binding; TAS:ProtInc.
 GO:0016887; F:ATPase activity; IEA:InterPro.
 GO:0005215; F:transporter activity; TAS:ProtInc.
 GO:0006200; P:ATP catabolic process; IEA:GOC. 
Interpro
 IPR003593; AAA+_ATPase.
 IPR003439; ABC_transporter-like.
 IPR017871; ABC_transporter_CS.
 IPR027417; P-loop_NTPase. 
Pfam
 PF00005; ABC_tran 
SMART
 SM00382; AAA 
PROSITE
 PS00211; ABC_TRANSPORTER_1
 PS50893; ABC_TRANSPORTER_2 
PRINTS