CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-006598
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 RING finger protein YKR017C 
Protein Synonyms/Alias
  
Gene Name
 YKR017C 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
250KLMDSSIKSFVQKHNubiquitination[1]
Reference
 [1] Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.
 Swaney DL, Beltrao P, Starita L, Guo A, Rush J, Fields S, Krogan NJ, VillĂ©n J.
 Nat Methods. 2013 Jul;10(7):676-82. [PMID: 23749301
Functional Description
  
Sequence Annotation
 ZN_FING 179 223 RING-type 1.
 ZN_FING 242 314 IBR-type.
 ZN_FING 341 370 RING-type 2.  
Keyword
 Complete proteome; Metal-binding; Reference proteome; Repeat; Zinc; Zinc-finger. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 551 AA 
Protein Sequence
MSSGTENDQF YSFDESDSSS IELYESHNTS EFTIHGLVFP KLISVTSQDS EFDINEDEDG 60
VDTIYEGMLD APLTKNNKRI LCEGSVPNLS YECLTTKGIF ERMLQRVDHL QPIFAIPSAD 120
ILILLQHYDW NEERLLEVWT EKMDELLVEL GLSTTANIKK DNDYNSHFRE VEFKNDFTCI 180
ICCDKKDTET FALECGHEYC INCYRHYIKD KLHEGNIITC MDCSLALKNE DIDKVMGHPS 240
SSKLMDSSIK SFVQKHNRNY KWCPFADCKS IVHLRDTSSL PEYTRLHYSP FVKCNSFHRF 300
CFNCGFEVHS PADCKITTAW VKKARKESEI LNWVLSHTKE CPKCSVNIEK NGGCNHMVCS 360
SCKYEFCWIC EGPWAPHGKN FFQCTMYKNN EDNKSKNPQD ANKTLKKYTF YYRLFNEHEV 420
SAKLDWNLGQ TLGTKVHALQ ERIGISWIDG QFLSESLKVL NEGRTVLKWS FAVAYYSDAS 480
HNLTKIFVDN QMLLANAVES LSELLQIKTP EVIMKRRPEF YNKAGYVENR TTALMECGRE 540
LLCKGICKAA E 551 
Gene Ontology
 GO:0003676; F:nucleic acid binding; IEA:InterPro.
 GO:0004842; F:ubiquitin-protein ligase activity; IDA:SGD.
 GO:0008270; F:zinc ion binding; IEA:InterPro.
 GO:0036205; P:histone catabolic process; IMP:SGD.
 GO:0016574; P:histone ubiquitination; IDA:SGD. 
Interpro
 IPR018957; Znf_C3HC4_RING-type.
 IPR002867; Znf_C6HC.
 IPR001878; Znf_CCHC.
 IPR001841; Znf_RING.
 IPR013083; Znf_RING/FYVE/PHD.
 IPR017907; Znf_RING_CS. 
Pfam
 PF01485; IBR
 PF00097; zf-C3HC4 
SMART
 SM00647; IBR
 SM00184; RING
 SM00343; ZnF_C2HC 
PROSITE
 PS00518; ZF_RING_1
 PS50089; ZF_RING_2 
PRINTS